Philippe GROSJEAN
Number of publications : 158
2022
Computer developments/Textual, factual or bibliographical database
  • Grosjean, P., & Engels, G. (2022). "Biological data science courses at UMONS, Belgium: Activity for 2018-2019". doi:10.5281/zenodo.6420347
  • Grosjean, P., Engels, G., & Conotte, R. (2022). "Biological data science courses at UMONS, Belgium: student's activity for 2019-2020". doi:10.5281/zenodo.6420878
  • Grosjean, P., Engels, G., & Conotte, R. (2022). "Biological data science courses at UMONS, Belgium: student's activity for 2020-2021". doi:10.5281/zenodo.6420917
Scientific conferences in universities or research centers/Scientific conference in universities or research centers
  • Grosjean, P.* , & Engels, G.*. (18 May 2022). "Rapport de progression en évaluation continue". Paper presented at Journée des Enseignants, Mons, Belgium.
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2021
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Engels, G., & Grosjean, P. (13 July 2021). "Retour d'expérience sur l'enseignement de la science des données biologiques en classe inversée". Paper presented at Rencontres R 2021, Paris, France.
  • Grosjean, P., & Engels, G. (13 July 2021). "Perception de R et RStudio par des apprenants dans des cours de science des données biologiques". Paper presented at Rencontres R 2021, Paris, France.
  • Grosjean, P., & Engels, G. (08 July 2021). "An integrated teaching environment for R with {learnitdown}". Paper presented at UseR!2021, Zurich, Switzerland.
Scientific congresses and symposiums/Poster
  • Engels, G., & Grosjean, P. (08 July 2021). "Teaching Biology students to code smoothly with learnR and gradethis". Poster session presented at UseR!2021, Zurich, Switzerland.
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2020
Scientific journals/Article
  • Fullgrabe, L., Grosjean, P., Gobert, S., Lejeune, P., Leduc, M., Engels, G., Dauby, P., Boissery, P., & Richir, J. (23 July 2020). Zooplankton dynamics in a changing environment: A 13-year survey in the northwestern Mediterranean Sea. "Marine Environmental Research, 159".
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P. (24 November 2020). "Use of machine learning to (semi)-automatically analyse plankton digital images". Paper presented at International Coastal Buoys Network Workshop, Paris, France.
Scientific congresses and symposiums/Paper published in a journal
  • Wacquet, G., Lefebvre, A., Blondel, C., Louchart, A., Grosjean, P., Neaud-Masson, N., Belin, C., & Artigas, L. F. (2020). "Combination of 'machine learning' methodologies and imaging- in-flow system to detect Harmful Algae semi-automatically". Paper presented at 18th International Conference on Harmful Algae, Nantes, France.
Computer developments/Software
  • Grosjean, P., & Engels, G. (2020). "BioDataScience3: A Series of Learnr Documents for Biological Data Science course 3: An R package for e-learning package for teaching biological data science".
  • Grosjean, P. (2020). "BioDataScience2: A Series of Learnr Documents for Biological Data Science course 2: An R package for e-learning package for teaching biological data science".
  • Grosjean, P., Engels, G., & Conotte, R. (2020). "BioDataScience1: A Series of Learnr Documents for Biological Data Science course 1: An R package for teaching biological data science".
  • Grosjean, P., & Engels, G. (2020). "BioDataScience - Initialize R environment for BioDataScience courses: An R package for teaching biological data science".
  • Grosjean, P. (2020). "Learndown: Use R markdown and bookdown for e-learning with h5p & Shiny/learnr apps: An R package for e-learning".
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2019
Scientific journals/Article
  • Rouabhi, Y. L., Grosjean, P., Zitouni, B., Hacene, O. R., & Richir, J. (07 June 2019). Reproductive cycle and follicle cleaning process of Mytilus galloprovincialis (Mollusca: Bivalvia) from a polluted coastal site in Algeria. "Invertebrate Reproduction and Development, 63" (4), 255-267. doi:10.1080/07924259.2019.1631221
  • Decan, A., Mens, T., & Grosjean, P. (01 February 2019). An empirical comparison of dependency network evolution in seven software packaging ecosystems. "Empirical Software Engineering, 24" (1), 381-416. doi:10.1007/s10664-017-9589-y
Scientific congresses and symposiums/Poster
  • Engels, G., & Grosjean, P. (09 July 2019). "Better learning of data science in a biology curriculum by using R, Studio, learnr & Github Classroom". Poster session presented at useR, Toulouse, France.
  • Engels, G., Georges, N., Conotte, R., Batigny, A., & Grosjean, P. (05 March 2019). "Réponses écophysiologiques de Seriatopora hystrix (Dana, 1846) lors de stress hypo- et hypersalin". Poster session presented at Mardi des Chercheurs, Mons, Belgium.
  • Engels, G., & Grosjean, P. (05 March 2019). "Classe inversée et outils interactifs : les clés de la motivation des étudiants en apprentissage de la science des données". Poster session presented at 3ème Journée des Enseignants de l'UMONS, Mons, Belgium.
  • Engels, G., & Grosjean, P. (03 March 2019). "Amélioration de l'apprentissage via l'analyse des résultats de quiz interactifs". Poster session presented at 3ème Journée des Enseignants de l'UMONS, Mons, Belgium.
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2018
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., & Engels, G. (04 June 2018). "Est-il possible d'améliorer encore la courbe d'apprentissage de R au delà de tidyverse? Les packages flow et chart". Paper presented at Septièmes rencontres R, Rennes, France.
  • Fullgrabe, L., Grosjean, P., & Richir, J. (11 April 2018). "Evolution et variations à long terme du mésozooplancton de la Baie de Calvi". Paper presented at Workshop STARECAPMED, Calvi, France.
  • Rouabhi, L., Grosjean, P., Rouane Hassene, O., & Richir, J. (21 March 2018). "Suivi de la bioaccumulation de métaux traces dans la moule Mytilus galloprovincialis dans la région ouest algérienne". Paper presented at Septième Colloque International Sciences & Environnement, Bizerte, Tunisia.
Scientific congresses and symposiums/Poster
  • Engels, G., Georges, N., Conotte, R., Batigny, A., & Grosjean, P. (14 December 2018). "Ecophysiological responses of Seriatopora hystrix (Dana, 1846) to short-term hypo- and hypersaline stress". Poster session presented at The 25th Benelux congress of Zoology, 'Zoology in the Anthropocene', Anvers, Belgium.
  • Wacquet, G., Lefebvre, A., Blondel, C., Louchart, A., Grosjean, P., & Artigas, L. F. (23 October 2018). "Combination of 'machine learning' methodologies and imaging- in-flow system to detect Harmful Algae semi-automatically". Poster session presented at 18th International Conference on Harmful Algae, Nantes, France.
  • Engels, G., & Grosjean, P. (04 July 2018). "Introduction de nouveaux outils (learn, GitHub Classroom,...) dans les cours de Science des données en biologie". Poster session presented at Septièmes rencontres R, Rennes, France.
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2017
Scientific journals/Article
  • Todinanahary, G., Lavitra, T., Puccini, N., Grosjean, P., & Eeckhaut, I. (03 July 2017). Community-based coral aquaculture in Madagascar: A profitable economic system for a simple rearing technique? "Aquaculture, 467", 225-234.
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2016
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Rouabhi, L., Rouanne, H. O., Benkrama, H., Zitouni, B., Grosjean, P., & Richir, J. (16 December 2016). "Bioaccumulation of trace metals in Mytilus galloprovincialis from the Algerian west coast". Paper presented at Benelux Congress of Zoology, Antwerp, Belgium.
  • Georges, N., Richir, J., Batigny, A., Borges, A., Champenois, W., Gobert, S., Roberty, S., & Grosjean, P. (16 December 2016). "Copper toxicity on coral holobiont photosynthetic processes". Paper presented at Benelux Congress of Zoology, Antwerp, Belgium.
  • Fullgrabe, L., Richir, J., Batigny, A., Goffart, A., Lejeune, P., Gobert, S., & Grosjean, P. (16 December 2016). "Long-term changes of the zooplankton community in the Bay of Calvi (Corsica, France)". Paper presented at Benelux Congress of Zoology, Antwerp, Belgium.
  • Richir, J., Batigny, A., Georges, N., Fullgrabe, L., Suvarov, P., Gobert, S., Lepoint, G., Borges, A., Champenois, W., Franck, F., Roberty, S., Lejeune, P., Abadie, A., Leduc, M., Boissery, P., Rigaud, V., Andral, B., Lefebvre, A., Belin, C., & Grosjean, P. (27 October 2016). "EcoNum, a research unit devoted to marine environment monitoring". Paper presented at 2ème workshop 'Environnement Marin et Développement Durable: Quels enjeux pour demain?', Essaouira, Morocco.
  • Richir, J., Abadie, A., Grosjean, P., Franck, F., Lepoint, G., Lejeune, P., Silva, J., Santos, R., & Gobert, S. (18 October 2016). "A one year survey of seagrass primary productivity using the diving-PAM technique". Paper presented at International Seagrass Biology Workshop 12, Nant Gwrtheyrn, United Kingdom.
  • Grosjean, P., Denis, K., Wacquet, G., Rousseau, V., Parent, J.-Y., Lancelot, C., Hamad, D., Artigas, L. F., Lefebvre, A., Naud-Masson, N., Maurer, D., Tunin-Ley, A., Colas, F., & Belin, C. (31 May 2016). "Semi-automatic analysis of FlowCAM phytoplankton data using Zoo/PhytoImage". Paper presented at JERICO-Next, Wimereux, France.
  • Richir, J., Gobert, S., Lejeune, P., Watson, G., & Grosjean, P. (13 April 2016). "Environmental monitoring: between science and decision-making". Paper presented at CIBIM (Centre Interuniversitaire de Biologie Marine), Mons, Belgium.
  • Richir, J., & Grosjean, P. (28 January 2016). "Effets anthropiques sur les écosystèmes marins". Paper presented at Institut Energie - Institut Complexys - Journées thématiques: Modéalisation/Simulation, Mons, Belgium.
Scientific congresses and symposiums/Paper published in a journal
  • Decan, A., Mens, T., Claes, M., & Grosjean, P. (2016). "When GitHub meets CRAN: An Analysis of Inter-Repository Package Dependency Problems". Paper presented at IEEE International Conference on Software Analysis, Evolution, and Reengineering, Osaka, Japan.
Computer developments/Software
  • Koenker, R., Pin Tian, N., Zeileis, A., Grosjean, P., & Ripley, B. D. (2016). "Package 'quantreg'".
Diverse speeches and writings/Article for a general audience
  • Brihaye, T., Boulanger, N., Grosjean, P., & Mens, T. (2016). COMPLEXYS - Research Institute for Complex Systems: Multidisciplinarity serving society. "Belgian Research in Belgium".
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2015
Scientific journals/Article
  • Mens, T., & Grosjean, P. (01 October 2015). The Ecology of Software Ecosystems. "Computer, 48" (10), 85-87. doi:10.1109/MC.2015.298
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Lefebvre, A., Neaud-Masson, N., Maurer, D., Wacquet, G., Grosjean, P., Colas, F., Tardivel, M., Artigas, L. F., & Belin, C. (02 April 2015). "Optimisation of the monitoring strategy for the French National Phytoplankton and Phytotoxins Network (REPHY) using semi-automated digital images analysis". Paper presented at Conférence GDR PhycoTox / GIS Cyrano, Brest, France.
  • Wacquet, G., Grosjean, P., Hamad, D., Lefebvre, A., Neaud-Masson, N., Colas, F., Maurer, D., & Artigas, L. F. (02 April 2015). "Zoo/Phytoimage: current advances in the semi-automated classification of plankton digital images". Paper presented at Conférence GDR PhycoTox / GIS Cyrano, Brest, France.
  • Grosjean, P., Denis, K., Wacquet, G., Ali, N., Rousseau, V., Parent, J.-Y., Lancelot, C., Hamad, D., Artigas, L. F., Lefebvre, A., & Belin, C. (25 February 2015). "Towards a better classification of plankton digital images: suspect detection, error correction and real-time". Paper presented at ASLO Aquatic Sciences Meeting, Granada, Spain.
  • Leblud, J., Moulin, L., Batigny, A., Dubois, P., & Grosjean, P. (24 February 2015). "Ecophysiological changes of a simplified coral reef community facing ocean acidification: A one year study in artificial reef mesocosms". Paper presented at ASLO Aquatic Sciences Meeting, Granada, Spain.
Scientific congresses and symposiums/Paper published in a journal
  • Decan, A., Mens, T., Claes, M., & Grosjean, P. (2015). "On the Development and Distribution of R Packages: An Empirical Analysis of the R Ecosystem". Paper presented at International Workshop on Software Ecosystems (IWSECO), .
  • Mens, T., Claes, M., Tabout, N., & Grosjean, P. (2015). "An Empirical Study of Identical Function Clones in CRAN". Paper presented at IEEE International Conference on Software Analysis, Evolution, and Reengineering, Montréal, Canada.
Scientific congresses and symposiums/Poster
  • Leblud, J., Moulin, L., Batigny, A., Dubois, P., & Grosjean, P. (10 March 2015). "Ecophysiological changes of a simplified coral reef community facing ocean acidification: a one year study in artificial reef mesocosms". Poster session presented at 8ème édition de la Matinée des Chercheurs 2015 (MdC2015), Mons, Belgium.
Reports/Internal report
  • Wacquet, G., & Grosjean, P. (2015). "Projet FlowCAM/ZooPhytoImage : Rapport d'avancement juin 2015".
  • Wacquet, G., & Grosjean, P. (2015). "Projet FlowCAM/ZooPhytoImage : Rapport d'avancement mars 2015".
  • Wacquet, G., Grosjean, P., Colas, F., Hamad, D., & Artigas, L. F. (2015). "Version évolutive de l'outil opérationnel de numérisation et d'analyse semi-automatique d'images de phytoplancton, utilisant le matériel FlowCAM et le logiciel ZooPhytoImage. Nouvelles perspectives".
Dissertations and theses/Doctoral thesis
  • Sheridan, C. (2015). "Influences of sedimentation on coral disease development - Integrated study based on ecological trends and model species". Unpublished doctoral thesis, Université de Mons. Jury: Eeckhaut, I. (Promotor), Flammang, P., Grosjean, P., Kushmaro, A., Gillan, D., & Guillaume, M.
Computer developments/Software
  • Grosjean, P., Denis, K., Wacquet, G., Irigoien, X., Boyra, G., Arregi, I., Lopez-Urrutia, A., Sieracki, M. E., & Tupper, B. (2015). "Zoo/PhytoImage version 5.4-0 : Analyse d'images de plancton assistée par ordinateur".
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2014
Parts of books/Contribution to collective works
  • Mens, T., Claes, M., Grosjean, P., & Serebrenik, A. (2014). Studying Evolving Software Ecosystems based on Ecological Models. In T. Mens, A. Serebrenik, A. Cleve, T. Mens (Ed.), A. Serebrenik (Ed.), & A. Cleve (Ed.), "Evolving Software Systems" (pp. 297-326). Springer.
  • Grosjean, P., & Denis, K. (2014). Supervised classification of images, applied to plankton samples using R and Zooimage. In "Data mining applications with R" (pp. 331-366). Elsevier.
Scientific journals/Article
  • Moulin, L., Grosjean, P., Leblud, J., Batigny, A., Collard, M., & Dubois, P. (20 November 2014). Long-term mesocosms study of the effects of ocean acidification on growth and physiology of the sea urchin Echinometra mathaei. "Marine Environmental Research, 103", 103-114.
  • Leblud, J., Moulin, L., Batigny, A., Dubois, P., & Grosjean, P. (2014). Technical note: Artificial coral reef mesocosms for ocean acidification investigations. "Biogeosciences Discussions".
  • Sheridan, C., Grosjean, P., Leblud, J., Palmer, C. V., Kushmaro, A., & Eeckhaut, I. (22 August 2014). Sedimentation rapidly induces an immune response and depletes energy stores in a hard coral. "Coral Reefs, 33" (4), 1067-1076.
  • Moulin, L., Grosjean, P., Leblud, J., Batigny, A., & Dubois, P. (01 August 2014). Impact of elevated pCO2 on acid-base regulation of the sea urchin Echinometra mathaei and its relation to resistance to ocean acidification: a study in mesocosms. "Journal of Experimental Marine Biology and Ecology, 457", 97-104.
Books/Book published as author, translator, etc.
  • Faria, J. C., Grosjean, P., Jelihovschi, E. G., & Pietrobon, R. (2014). "Tinn-R Editor (2nd ed.)". Editus.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P. (30 October 2014). "Zoo/PhytoImage version 5. Simplification de l'interface pour utilisation REPHY en routine". Paper presented at Journées REPHY 2014, Nantes, France.
  • Grosjean, P. (25 August 2014). "Do software evolve too fast? A biologist's point of view". Paper presented at 2nd International Workshop on Ecosystem Architectures, Vienna, Austria.
  • Moulin, L., Leblud, J., Batigny, A., Dubois, P., & Grosjean, P. (10 July 2014). "Effects of ocean acidification on the bioerosion by the sea urchin Echinometra mathaei in coral reefs". Paper presented at Gordon Research Conference on Ocean Global Change Biology, Waterville Valley, United States - New Hampshire.
  • Wacquet, G., Lefebvre, A., Neaud-Masson, N., Belin, C., & Grosjean, P. (13 June 2014). "Etude et caractérisation de la dynamique et de la diversité phytoplanctonique par analyse d'images et classification semi-automatisée". Paper presented at Instrumentation haute fréquence pour l'observation et la surveillance de l'environnement marin, Boulogne-sur-mer, France.
  • Claes, M., Mens, T., & Grosjean, P. (30 May 2014). "Beyond R CMD check: Helping R developers to detect CRAN package conflicts". Paper presented at useR! 2014, Los Angeles, United States.
  • Grosjean, P. (04 February 2014). "Using biology and ecology as inspiration for software maintenance". Paper presented at IEEE CSMR-WCRE 2014 Software Evolution Week, Antwerpen, Belgium.
Scientific congresses and symposiums/Paper published in a journal
  • Claes, M., Mens, T., & Grosjean, P. (2014). "maintaineR: A web-based dashboard for maintainers of CRAN packages". Paper presented at IEEE International Conference on Software Maintenance and Evolution, Victoria, Canada. doi:10.1109/ICSME.2014.104
  • Claes, M., Mens, T., & Grosjean, P. (2014). "On the maintainability of CRAN packages". Paper presented at IEEE CSMR-WCRE 2014 Software Evolution Week, Antwerpen, Belgium. doi:10.1109/CSMR-WCRE.2014.6747183
  • Mens, T., Claes, M., & Grosjean, P. (2014). "ECOS: Ecological Studies of Open Source Software Ecosystems". Paper presented at IEEE CSMR-WCRE 2014 Software Evolution Week, Antwerpen, Belgium. doi:10.1109/CSMR-WCRE.2014.6747205
Scientific congresses and symposiums/Poster
  • Sheridan, C., Kushmaro, A., Baele, J.-M., Grosjean, P., Raymundo, L. J., & Eeckhaut, I. (24 August 2014). "Sedimentation influences on coral microbial communities". Poster session presented at ISME 15, Séoul, South Korea.
Dissertations and theses/Doctoral thesis
  • Denis, K. (2014). "Improvement and use of supervised classification applied to plankton digital images in Zoo/PhytoImage: (real-time) study of plankton communities in the North Sea". Unpublished doctoral thesis, Université de Mons. Jury: Grosjean, P. (Promotor), Eeckhaut, I., Artigas, L. F., Lancelot, C., Flammang, P., & Wattiez, R.
  • Moulin, L. (2014). "Impact de l'acidification des océans sur l'oursin Echinometra mathaei et son activité bioérosive des récifs coralliens : étude en mésocosmes artificiels". Unpublished doctoral thesis, Université de Mons. Jury: Dubois, P. (Promotor), Grosjean, P. (Promotor), Chou, L., Flammang, P., De Ridder, C., & Gazeau, F.
Computer developments/Software
  • Grosjean, P., & Denis, K. (2014). "Package 'zooimage'".
  • Grosjean, P. (2014). "Package 'mlearning'".
Diverse speeches and writings/Other
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2013
Scientific journals/Article
  • Hocking, T. D., Wutzler, T., Ponting, K., & Grosjean, P. (31 August 2013). Sustainable, extensible documentation generation using inlinedocs. "Journal of Statistical Software, 54" (6), 1-20.
  • Collard, M., Laitat, K., Moulin, L., Catarino, A., Grosjean, P., & Dubois, P. (07 June 2013). Buffer capacity of the coelomic fluid in echinoderms. "Comparative Biochemistry and Physiology. Part A, Molecular and Integrative Physiology, 166", 199-206.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Denis, K., & Ali, N. (03 December 2013). "Zoo/PhytoImage: reconnaissance automatique du plancton par analyse d'image et classification supervisée". Paper presented at Dymaphy / Resomar, Boulogne-sur-mer, France.
  • Grosjean, P., Denis, K., & Ali, N. (02 December 2013). "Real-time and semi-automatic classification of phytoplankton using Zoo/PhytoImage". Paper presented at Dymaphy / Resomar, Boulogne-sur-mer, France.
  • Pascal, B., Lavitra, T., Dubois, P., Lepoint, G., Grosjean, P., Todinanahary, G., Tsiresy, G., & Eeckhaut, I. (21 April 2013). "Presentation of the 'polyaquaculture in Madagascar': A research program to ensure sustainable coastal livelihoods in southwestern and northern regions of the Red Island". Paper presented at 21st International Seaweed Symposium, Bali, Indonesia.
  • Moulin, L., Dubois, P., & Grosjean, P. (04 January 2013). "Impact de l'acidification sur la bioérosion des coraux hermatypiques par les oursins: étude en mésocosme". Paper presented at CIBIM, Mons, Belgium.
  • Leblud, J., Grosjean, P., Moulin, L., & Batigny, A. (04 January 2013). "Changements écophysiologiques des scléractiniaires hermatypiques sous l'augmentation de la pCO2: étude en chemostats". Paper presented at CIBIM, Mons, Belgium.
  • Claes, M., Mens, T., & Grosjean, P. (2013). "Towards an empirical analysis of the maintainability of CRAN packages". Paper presented at BENEVOL 2013, Mons, Belgium.
Scientific congresses and symposiums/Paper published in a journal
  • Claes, M., Mens, T., Grosjean, P., & Serebrenik, A. (2013). "Modeling software evolution using biological evolution theories". Paper presented at ICSE-NIER, San Francisco, United States.
Scientific congresses and symposiums/Poster
  • Ali, N., Grosjean, P., Hamad, D., & Artigas, L. F. (31 March 2013). "Optimisation de l'application de l'analyse d'image, combinée à la cytométrie en flux, pour l'étude et le suivi de communautés phytoplanctoniques des eaux côtières". Poster session presented at 7ième Matinée des Chercheurs, Mons, Belgium.
  • Laghdass, M., Leblud, J., Moulin, L., Gillan, D., Grosjean, P., & Wattiez, R. (31 March 2013). "Effect of ocean acidification on coral-associated bacterial communities in artificial mesocosms by metaproteogenomic approach". Poster session presented at 7ième Matinée des Chercheurs, Mons, Belgium.
Patents/Patent
  • Grosjean, P., Leblud, J., & Batigny, A. (24 January 2013). "Methods and apparatus for analysis of aquatic chemical and/or biological systems".
Diverse speeches and writings/Other
  • Denis, K., & Grosjean, P. (2013). "Amélioration de la validation partielle des suspects et de la correction statistique de l'erreur dans Zoo/PhytoImage pour les échantillons REPHY".
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2012
Scientific journals/Article
  • Lancelot, C., Grosjean, P., Rousseau, V., Breton, E., & Glibert, P. M. (01 March 2012). Rejoinder to 'Perils of correlating CUSUM-transformed variables to infer ecological relationships (Breton et al., 2006; Glibert 2010)'. "Limnology and Oceanography, 57" (2), 669-670. doi:10.4319/lo.2012.57.2.0669
  • Gillan, D., Baeyens, W., Bechara, R., Billon, G., Denis, K., Grosjean, P., Leermakers, M., Lesven, L., Pede, A., Sabbe, K., & Gao, Y. (26 January 2012). Links between bacterial communities in marine sediments and trace metal geochemistry as measured by in situ DET/DGT approaches. "Marine Pollution Bulletin, 64", 353-362. doi:10.1016/j.marpolbul.2011.11.001
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Sheridan, C., Grosjean, P., & Eeckhaut, I. (19 October 2012). "How annoying dirt can be - a coral immunity perspective". Paper presented at 19th Benelux Congress of Zoology, Brussels, Belgium.
  • Dubois, P., Catarino, A., Collard, M., Dery, A., Laitat, K., Moulin, L., & Grosjean, P. (27 September 2012). "Adult echinoderms from fluctuating environments: Scope for adaptation or acclimatization to ocean acidification?" Paper presented at Third International Symposium on the Ocean in a High CO2 World, Monterey, United States - California. doi:10.1088/1748-0221/5/03/T03014
  • Leblud, J., Grosjean, P., & Batigny, A. (25 September 2012). "Ecophysiological Changes of Hermatypic Scleractinians in High PCO2 Chemostat". Paper presented at Third International Symposium on the Ocean in a High CO2 World, Monterey, United States - California.
  • Moulin, L., Leblud, J., Batigny, A., Dubois, P., & Grosjean, P. (25 September 2012). "Impact of ocean acidification on the sea urchin Echinometra Mathaei and its roles as grazer and bioeroder in coral reefs". Paper presented at Third International Symposium on the Ocean in a High CO2 World, Monterey, United States - California.
  • Moulin, L., Dubois, P., & Grosjean, P. (21 August 2012). "Impact of ocean acidification on growth and physiology of the sea urchin Echinometra mathaei: a study in mesocosms". Paper presented at 14th International Echinoderm Conference, Brussels, Belgium.
  • Fransolet, D., Ugille, A., Roberty, S., Grosjean, P., & Plumier, J.-C. (11 July 2012). "Increased cell proliferation in Seriatopora hystrix following heat-induced bleaching". Paper presented at 12th International Coral Reef Symposium, Cairns, Australia.
  • Mens, T., Claes, M., Grosjean, P., & Serebrenik, A. (09 July 2012). "Applying Biological Evolution to Software Ecosystems: A Case study with Gnome". Paper presented at BENEVOL, Delf, Netherlands.
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2011
Books/Book published as author, translator, etc.
  • Lancelot, C., Rousseau, V., Lacroix, G., Denis, K., Gypens, N., Grosjean, P., Van Nieuwenhove, K., Parent, J.-Y., Ruddick, K., & Delbare, D. (2011). "Combined effects of changing hydroclimate and human activity on coastal ecosystem health - AMORE III". Belgian Science Policy.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Moulin, L., Grosjean, P., & Dubois, P. (30 September 2011). "Impact of ocean acidification on growth and physiology of Echinometra mathaei: a mesocosm study". Paper presented at World conference on marine biodiversity, Aberdeen, United Kingdom.
  • Tunin-Ley, A., Maurer, D., Denis, K., Belin, C., & Grosjean, P. (15 February 2011). "Coupling optical detection by FlowCAM to automatic classification by the software Zoo/PhytoImage for automation of phytoplankton community identification". Paper presented at ASLO Aquatic Sciences Meeting, San Juan, Unknown/unspecified.
  • Maurer, D., Tunin-Ley, A., Denis, K., Barbier, C., Pouvreau, S., & Grosjean, P. (15 February 2011). "Semi-automated identification of planktonic larvae of the oyster Crassostrea gigas using FlowCAM coupled to the image analysis software Zoo/PhytoImage". Paper presented at ASLO Aquatic Sciences Meeting, San Juan, Unknown/unspecified.
  • Denis, K., Tunin-Ley, A., Maurer, D., & Grosjean, P. (15 February 2011). "Statistical error correction of Zoo/PhytoImage identification by partial manual validation of suspect particles". Paper presented at ASLO Aquatic Sciences Meeting, San Juan, Unknown/unspecified.
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2010
Books/Book published as author, translator, etc.
  • Faria, J. C., Grosjean, P., Jelihovschi, E. G., & Pietrobon, R. (2010). "Tinn-R Editor". Rmetrics Association.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Leblud, J., Batigny, A., & Grosjean, P. (09 December 2010). "Study of hermatypic scleractinian Seriatomora hystrix in high pCO2 chemostats". Paper presented at Euro ISRS Symposium, Wageningen, Netherlands.
  • Denis, K., & Grosjean, P. (10 June 2010). "Original method to optimize groups in automatic plankton classification, applied to North Sea phytoplankton using Zoo/PhytoImage". Paper presented at Joint meeting ASLO & NABS. Aquatic sciences: global changes from the center to the edge, Santa Fe, United States.
Diverse speeches and writings/Other
  • Grosjean, P. (2010). "svUnit: A framework for unit testing in R".
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2009
Scientific journals/Article
  • Irigoien, X., Fernandes, J. A., Grosjean, P., Denis, K., Albaina, A., & Santos, M. (01 January 2009). Spring zooplankton distribution in the Bay of Biscay from 1998 to 2006 in relation with anchovy recruitment. "Journal of Plankton Research, 31" (1), 1-17. doi:10.1093/plankt/fbn096
  • Lavitra, T., Rasolofonirina, R., Grosjean, P., Jangoux, M., & Eeckhaut, I. (01 January 2009). The effect of food quality and rearing density on growth and survival of epibenthic juveniles of the sea cucumber Holothuria scabra. "Western Indian Ocean J. Mar. Sci, 8" (1), 87-95.
  • Bailly, P., Grosjean, P., & Flammang, P. (01 January 2009). Measurement of the attachment strength of brachiolaria larvae and metamorphic individuals of the sea star Asterina gibbosa by centrifugation method. "Journal of Experimental Marine Biology and Ecology, 372" (1-2), 82-90. doi:10.1016/j.jembe.2009.02.011
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Romain, F., & Barton, K. (10 July 2009). "SciViews-K and Komodo Edit, a new platform-independent GUI/IDE for R". Paper presented at UseR!2009, Rennes, France.
  • Denis, K., Irigoien, X., Romain, F., Rousseau, V., Parent, J.-Y., Lancelot, C., & Grosjean, P. (09 July 2009). "Zoo/PhytoImage, a software for automatic analysis of plankton samples based on R and ImageJ". Paper presented at UseR!2009, Rennes, France.
Scientific congresses and symposiums/Poster
  • Denis, K., Parent, J.-Y., Rousseau, V., Lancelot, C., & Grosjean, P. (24 June 2009). "Near real-time monitoring of plankton in the Belgian Coastal Zone using Zoo/PhytoImage and the FlowCAM". Poster session presented at 3rd GLOBEC Open Science Meeting, Victoria, Canada.
Patents/Patent
  • Gorsky, G., Picheral, M., & Grosjean, P. (30 June 2009). "Optical scanning device for liquid biological samples, process of operation and computer program for a computer connected to said device".
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2008
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Leblud, J., Batigny, A., & Grosjean, P. (07 October 2008). "Effect of high CO2 on the physiology and growth of the hermatypic coral Seriatopora hystrix in nano-sized chemostat". Paper presented at 2nd Symposium on the Ocean in a High-CO2 World, Monaco, Monaco.
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2007
Scientific journals/Article
  • Kell, L. T., Mosqueria, I., Grosjean, P., Fromentin, J.-M., Garcia, D., Hillary, R., Jardim, E., Mardle, S., Pastoors, M., Poos, J. J., Scott, F., & Scott, R. D. (02 January 2007). FLR: an open-source framework for the evaluation and development of management strategies. "ICES Journal of Marine Science, 64" (4), 640-646. doi:10.1093/icesjms/fsm012
  • Benfield, M. C., Grosjean, P., Culverhouse, P., Irigoien, X., Sieracki, M. E., Lopez-Urrutia, A., Dam, H. G., Hu, Q., Davis, C. S., Hansen, A., Pilskaln, C. H., Riseman, E., Schultz, H., Utgoff, P. E., & Gorsky, G. (01 January 2007). RAPID : Research on Automated Plankton Identification. "Journal of Oceanography, 20" (2), 172-187.
Scientific congresses and symposiums/Unpublished conference/Abstract
Reports/Internal report
  • Lancelot, C., Rousseau, V., Lacroix, G., Denis, K., Gypens, N., Grosjean, P., Van Nieuwenhove, K., Parent, J.-Y., Ruddick, K., & Delbare, D. (2007). "Combined effects of changing hydroclimate and human activity on coastal ecosystem health - AMORE III: Final report phase I - Summary". Belgian Science Policy.
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2006
Scientific congresses and symposiums/Unpublished conference/Abstract
Diverse speeches and writings/Other
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2005
Parts of books/Contribution to collective works
  • Vaïtilingon, D., Jangoux, M., & Grosjean, P. (2005). Cultured aquatic animal species: The european edible echinoid Paracentrotus lividus. In "Aquaculture Compendium". Wallingford, United Kingdom: CAB International.
Scientific journals/Article
  • Haesaerts, D., Finlay, J. A., Callow, M. E., Callow, J. A., Grosjean, P., Jangoux, M., & Flammang, P. (14 October 2005). Evaluation of the attachment strength of individuals of Asterina gibbosa (Asteroïdea, Echinodermata) during the perimetamorphic period. "Biofouling, 21" (5-6), 229-235. doi:10.1080/08927010500414901
  • Warembourg, C., Grosjean, P., Picheral, M., Ibanez, F., & Gorsky, G. (01 January 2005). Le ZOOSCAN: un système d'imagerie rapide pour la mesure et la classification automatique du zooplancton. "Journal de Recherche Océanographique, 30", 1-12.
Scientific congresses and symposiums/Unpublished conference/Abstract
Diverse speeches and writings/Other
  • Grosjean, P. (2005). "R: introductory course for biologists".
  • Grosjean, P., Lecoutre, E., Faria, J. C., & Rufino, M. (2005). "SciViews-R: A GUI API and a suite of applications for R. Version 0.8-9".
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2004
Scientific journals/Article
  • Grosjean, P., Picheral, M., Warembourg, C., & Gorsky, G. (01 January 2004). Enumeration, measurement, and identification of net zooplankton samples using the ZOOSCAN digital imaging system. "ICES Journal of Marine Science, 61" (4), 518-525. doi:10.1016/j.icesjms.2004.03.012
Diverse speeches and writings/Other
  • Grosjean, P. (2004). "Getting started with SciViews, R and R Commander".
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2003
Scientific journals/Article
  • Gorsky, G., & Grosjean, P. (01 April 2003). Qualitative and quantitative assessment of zooplankton samples. "GLOBEC International Newsletter, 9" (1), 5.
  • Grosjean, P., Spirlet, C., & Jangoux, M. (01 January 2003). A functional growth model with intraspecific competition applied to a sea urchin, Paracentrotus lividus. "Canadian Journal of Fisheries and Aquatic Sciences, 60", 237-246.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Picheral, M., Warembourg, C., & Gorsky, G. (21 May 2003). "Enumeration, measurement and identification of net zooplankton samples using the ZOOSCAN digital imaging system". Paper presented at 3rd Zooplankton Production Symposium, Gijon, Spain.
Scientific congresses and symposiums/Paper published in a journal
  • Grosjean, P. (2003). "SciViews: an object-oriented abstraction layer to design GUIs on top of various calculation kernels". Paper presented at Distributed Statistical Computing, Vienna, Austria.
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2002
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Picheral, M., Warembourg, C., & Gorsky, G. (20 October 2002). "New methods for treatment of net samples and for underwater imaging of zooplankton". Paper presented at PICES 11th Annual Meeting, Qingdao, China.
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2001
Scientific journals/Article
  • Vaitilingon, D., Morgan, R., Grosjean, P., Gosselin, P., & Jangoux, M. (28 April 2001). Effects of delayed metamorphosis and food rations on the perimetamorphic events in the echinoid Paracentrotus lividus (Lamarck, 1816) (Echinodermata). "Journal of Experimental Marine Biology and Ecology, 262", 41-60.
  • Spirlet, C., Grosjean, P., & Jangoux, M. (01 January 2001). Cultivation of Paracentrotus lividus (Echinodermata: Echinoidea) fed extruded feeds: digestion efficiency, somatic production and gonadal growth. "Aquaculture Nutrition, 7", 91-99.
Dissertations and theses/Doctoral thesis
  • Grosjean, P. (2001). "Growth model of the reared sea urchin Paracentrotus lividus (Lamarck, 1816)". Unpublished doctoral thesis, Université de Mons. Jury: Jangoux, M. (Promotor), Josens, G., Dubois, P., Lancelot, C., Deneubourg, J. L., & Russell, M.
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2000
Scientific journals/Article
Scientific congresses and symposiums/Paper published in a journal
  • Grosjean, P., & Jangoux, M. (2000). "Growth of reared sea urchin, Paracentrotus lividus (Lamarck): model and optimization". Paper presented at Green sea urchin workshop, Moncton, Canada.
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1999
Scientific congresses and symposiums/Paper published in a journal
  • Grosjean, P., Spirlet, C., & Jangoux, M. (1999). "Comparison of three body-size measurements for echinoids". Paper presented at 5th European Echinoderm Colloquium, Milano, Italy.
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1998
Scientific journals/Article
  • Spirlet, C., Grosjean, P., & Jangoux, M. (01 January 1998). Reproductive cycle of the echinoid Paracentrotus lividus: analysis by means of the maturity index. "Invertebrate Reproduction and Development, 34" (1), 69-81.
  • Spirlet, C., Grosjean, P., & Jangoux, M. (01 January 1998). Optimizing food distribution in closed-circuit cultivation of edible sea urchins (Paracentrotus lividus: Echinoidea). "Aquatic Living Resources, 11" (4), 273-277.
  • Grosjean, P., Spirlet, C., Gosselin, P., Vaitilingon, D., & Jangoux, M. (01 January 1998). Land-based closed cycle echiniculture of Paracentrotus lividus (Lamarck) (Echinoidea: Echinodermata): a long term experiment at a pilot scale. "Journal of Shellfish Research, 17" (5), 1523-1531.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Spirlet, C., & Jangoux, M. (17 February 1998). "Is land-based closed cycle echiniculture (sea urchin aquaculture) a viable alternative to fisheries today?" Paper presented at International Aquaculture Conference, Las Vegas, United States - Nevada.
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1997
Scientific journals/Article
  • Duchamps, R., Grosjean, P., & Van Osselaer, C. (01 January 1997). Quelques anormalités dans le genre Nautilus. "Arion, 22" (4), 133-135.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Spirlet, C., Lawrence, J., & Jangoux, M. (01 March 1997). "Optimizing somatic growth of the edible sea urchin (Paracentrotus lividus Lmk) (Echinodermata: Echinoidea) in closed-circuit cultivation with artificial diet". Paper presented at 3rd International Symposium on Nutritional Strategies and Management of Aquaculture Waste, Porto, Portugal.
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1996
Scientific journals/Article
  • Grosjean, P., Spirlet, C., & Jangoux, M. (01 January 1996). Experimental study of growth in the echinoid Paracentrotus lividus (Lamarck, 1816) (Echinodermata). "Journal of Experimental Marine Biology and Ecology, 201", 173-184.
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., Spirlet, C., & Jangoux, M. (07 August 1996). "Closed-circuit cultivation of the edible sea urchin Paracentrotus lividus: optimization of somatic growth through the control of abiotic environment". Paper presented at 9th International Echinoderm Conference, San Francisco, United States.
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1995
Scientific congresses and symposiums/Poster
  • Grosjean, P., Spirlet, C., & Jangoux, M. (11 April 1995). "Establishment and presumed causes of the trimodal distribution commonly observed in cultivated populations of juvenile Paracentrotus lividus". Poster session presented at 4th European Echinoderms Colloquium, London, United Kingdom.
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1994
Scientific congresses and symposiums/Paper published in a journal
  • Spirlet, C., Grosjean, P., & Jangoux, M. (1994). "Differentiation of the genital apparatus in a juvenile echinoid (Paracentrotus lividus)". Paper presented at Eighth International Echinoderm Conference, Dijon, France.
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1993
Scientific congresses and symposiums/Unpublished conference/Abstract
  • Grosjean, P., & Jangoux, M. (01 January 1993). "Effect of light on feeding in cultivated echinoids (Paracentrotus lividus)". Paper presented at Eighth International Echinoderm Conference, Dijon, France.
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